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Biopython 1.61을 설치하려고합니다. 나는 bash 터미널에 루트로 로그인했다. 저는 Mageia 2.0을 사용하고 있으며 OS의 모든 패키지/프로그램을 업데이트했습니다 (urpmi update -a
). Mopyia에서 Biopython 빌드 오류가 발생했습니다.
python setup.py build
, 실행 :
FAIL: test_protein_16130152 (test_SeqIO_online.EntrezTests)
Bio.Entrez.efetch(protein, 16130152, ...)
----------------------------------------------------------------------
Traceback (most recent call last):
File "test_SeqIO_online.py", line 77, in <lambda>
method = lambda x : x.simple(d, f, e, l, c)
File "test_SeqIO_online.py", line 65, in simple
self.assertEqual(seguid(record.seq), checksum)
AssertionError: 'NT/aFiTXyD/7KixizZ9sq2FcniU' != 'fCjcjMFeGIrilHAn6h+yju267lg'
======================================================================
ERROR: test_doctests (test_Tutorial.TutorialTestCase)
Run tutorial doctests.
----------------------------------------------------------------------
Traceback (most recent call last):
File "test_Tutorial.py", line 152, in test_doctests
ValueError: 4 Tutorial doctests failed: test_from_line_05671, test_from_line_06030, test_from_line_06190, test_from_line_06479
가 그럼 난
python setup.py install
실행을하지만, 역시 실패했습니다. 파이썬을 (
urpmi install lib64python-devel
)와
gcc
으로 업데이트했지만, 이미 업데이트되었습니다.
[[email protected] biopython-1.61]# python setup.py install
running install
running build
running build_py
warning: build_py_biopython: byte-compiling is disabled, skipping.
running build_ext
building 'Bio.Cluster.cluster' extension
gcc -pthread -fno-strict-aliasing -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -I/usr/include/ncursesw -DNDEBUG -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -g -fPIC -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include/python2.7 -c Bio/Cluster/clustermodule.c -o build/temp.linux-x86_64-2.7/Bio/Cluster/clustermodule.o
Bio/Cluster/clustermodule.c:2:31: fatal error: numpy/arrayobject.h: No such file or directory
compilation terminated.
error: command 'gcc' failed with exit status 1